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That's the wrong thing to do. The pickit has pull-downs on the PGC/PGD data lines (approx 4.7k), so pulling them high will create a voltage divider (see PK4 manual fig 3.7... pull-ups are a no-no)Connect them in sink fashion (cathode to IO pin, current limit resistor to Vdd)....
They'll act as strong pull ups for the pins which won't load the programmer.