Hi,
The trouble with datasheets and user manuals is that they are written by professionals for the industrial market, not the hobbist, so they pack in all the info they can which looks very confusing for the likes of us.
Those Read and Write timing diagrams do seems complex with the many signals that chips uses.
Basically it outputs the Address data to whatever device is required followed by opening the read or write data port.
Its a concept often not realised by the users of todays modern micros with intergrated ram and roms.
If you first identify the function of all those extra lines , like LDS and FC0-2, then follow though those flow chart in line with the timing diagrams and you should start to see how a complete read or write cycle functions.
You may also need to look at the datasheet of the other devices used like the ram chips and what pins tie up the that timing diagram.
I don't know if you have any 68000 hardware, but when I worked on similar devices, way before simulation software etc, you used to have a feature called Single Step together with a latch and leds on the Address and Data bus so you can examine how each machine instruction is working.
That would go a long way to helping you understand how it all works.