If I'm understanding correctly, and all you want to do is read/write to the serial port from your own programmes, then all you need to do is open the device file and use it directly (if that's not what you're trying to do then I appologise in advance!).
On the command line you can do things like
echo "foo" > /dev/ttyS0
This can be great for working with scripting languages like BASH script.
There is also a command for altering the port settings; can't quite remember, but it's called something like
setty.
If you're writing in C (or any other language for that matter) you just do something like
fd = open("/dev/ttyS0", O_RDWR)
You use
ioctl() for changing the port settings.
Of course, you can also point a terminal emulator programme like
minicom at the serial port and use it interactively.
<EDIT... and now I've replied to a ten-year-old thread.
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