Well if you're talking about a counter made of JK flip flops by yourself, I think you can, if you go to the digital systems textbooks you can find that truth table but for a 0 to 9 counter, for example in Digital Fundamentlas by Thomas Floyd you'll see it for a synchronous counter, and that's what I think you're talking about, because if you make an asynchronous counter, you don't even need the table. Houwever, look for that table i told you, and let it guide you to make your table for the 0 to 99 counter, but let me tell you, that table maybe nasty, so if you only need to make the counter i recommend to use the asynchronous, because to stop the count at 99, you only have to connect that configuration (the 99 in binary) to a NAND gate and that to the CLR pin and that will reset the count. But if you make it synchronous, you really need the table to reset the count at 99.
Good luck.
By the way you'll need 7 JKs