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Well, your certainly can multiplex multiple signals on a optic fiber, but why do you need it to be duplex?
What is the data frequency you need to send?
Are you controlling more than one IGBT. If so, is that 8 to 12kHz for each IGBT independently.The PWM frequency range is 8 to 12KHz. The main reason I am considering optical fiber link is due to EMI.