What a coincidence - I just setup my CNC with the same chip about a month ago. I do notice a ~10 - 15KHz or so high pitched whine, but I never bothered looking into it. I used to work with a relatively high end desktop CNC machine a couple years back, and remember a similar sound so I never bothered to look into it.
I don't have the particular timing values, but I'll dig them up later.
James